SNP Profiles of PA 107   View Data

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 Key

 1234567891011121314
_Input profile
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
1._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
2._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
3._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
4._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
5._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
6._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
7._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
8._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
9._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
10._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
11._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
12._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
13._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
14._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
15._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
16._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
17._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
18._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
19._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
20._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
21._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
22._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
23._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
24._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
25._PA_107_[PER]
CCAGCGTTTTCCTT_CCCCAAAGCCAA
26._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
27._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCC_
28._PA_107_[PER]
CCAGCGTTTTCCTTTTCC_AAAGCCAA
29._GC-02-001-1-01
CCAGCGTTTTCCTTTTCC_AAAGCCAA
30._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
31._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
32._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
33._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
34._GC-02-001-1-01
CCAGCGTTTTCCTT_CCCCAAAGCCAA
35._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
36._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCC_
37._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
38._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
39._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
40._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
41._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
42._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
43._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
44._RUQ_1728
__CG____TT_CC_AG_AA
45._RUQ_1728
GGAGCGAAAACCAAAA__AAAGGGAA
46._MITC-000340
GGAGCGAAAACCAAAA__AAAGGGAA
 1516171819202122232425262728
_Input profile
CTAACGCTCCGGGGGGCTCCCGTTCTAA
1._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
2._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
3._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
4._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
5._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
6._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
7._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
8._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
9._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
10._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
11._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
12._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
13._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
14._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
15._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
16._GC-08-111-3-10
CTAACGCTCCGGGGGGCTCCCGTTCTAA
17._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
18._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
19._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
20._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
21._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
22._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
23._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
24._PA_107_[PER]
CTAACG_CCGGGGGGCTCCCGTTCTAA
25._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
26._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
27._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
28._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
29._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
30._GC-08-111-3-10
CTAACGCTCCGGGGGGCTCCCGTTCTAA
31._GC-08-111-3-10
CTAACGCTCCGGGGGGCTCCCGTTCTAA
32._GC-08-111-3-10
CTAACG_CCGGGGGGCTCCCGTTCTAA
33._GC-08-111-3-10
CTAACGCTCCGGGGGGCTCCCGTTCTAA
34._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
35._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
36._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
37._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
38._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
39._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
40._PA_107_[PER]
CTATCGCTCCGGGGGGCTCCCGTTCTAA
41._GC-08-111-3-10
CTATCGCTCCGGGGGGCTCCCGTTCTAA
42._PA_107_[PER]
CTAACGCTCCGGGGAACTCCCGTTCTAA
43._PA_107_[PER]
CTAACGCTCCGGGGAACTCCCGTTCTAA
44._RUQ_1728
_____GGGGAA_CCCG__AA
45._RUQ_1728
AGAACGAGGGCCCC_AGCCCGAA_AA
46._MITC-000340
AGAACGAGGGCCCC_AGCCCGAA_AA
 2930313233343536373839   
_Input profile
GGGGAACCAGCCAACTACATGGX_XX_XX_X
1._PA_107_[PER]
GGGGAACCAGCCAACTACATGGX_XX_XX_X
2._PA_107_[PER]
GGGGAACCAGCCAACTACATGGX_XX_XX_X
3._PA_107_[PER]
GGGGAACCAGCCAACTACATGGX_XX_XX_X
4._PA_107_[PER]
GGGGAACCAGCCAACTACATGGX_XX_XX_X
5._PA_107_[PER]
GGGGAACCAGCCAACTACATGGX_XX_XX_X
6._PA_107_[PER]
GGGGAACCAGCCAACTACATGGX_XX_XX_X
7._PA_107_[PER]
GGGGAACCAGCCAACTACATGGX_XX_XX_X
8._PA_107_[PER]
GGGGAACCAGCCAACTACATGGX_XX_XX_X
9._PA_107_[PER]
GGGGAACCAGCCAACTACATGGX_XX_XX_X
10._PA_107_[PER]
GGGGAACCAGCCAACTACATGGX_XX_XX_X
11._PA_107_[PER]
GGGGAACCAGCCAACTACATGGX_XX_XX_X
12._GC-02-001-1-01
GGGGAACCAGCCAACTACATGGX_XX_XX_X
13._GC-02-001-1-01
GGGGAACCAGCCAACTACATGGX_XX_XX_X
14._GC-02-001-1-01
GGGGAACCAGCCAACTACATGGX_XX_XX_X
15._GC-02-001-1-01
GGGGAACCAGCCAACTACATGGX_XX_XX_X
16._GC-08-111-3-10
GGGGAACCAGCCAACTACATGGX_XX_XX_X
17._GC-02-001-1-01
GGGGAACCAGCCAACTACATGGX_XX_XX_X
18._GC-02-001-1-01
GGGGAACCAGCCAACTACATGGX_XX_XX_X
19._GC-02-001-1-01
GGGGAACCAGCCAACTACATGGX_XX_XX_X
20._GC-02-001-1-01
GGGGAACCAGCCAACTACATGGX_XX_XX_X
21._GC-02-001-1-01
GGGGAACCAGCCAACTACATGGX_XX_XX_X
22._GC-02-001-1-01
GGGGAACCAGCCAACTACATGGX_XX_XX_X
23._GC-02-001-1-01
GGGGAACCAGCCAACTACATGGX_XX_XX_X
24._PA_107_[PER]
GGGGAACCAGCCAACTACATGGX_XX_XX_X
25._PA_107_[PER]
GGGGAACCAGCCAACTACATGGX_XX_XX_X
26._PA_107_[PER]
GGGGAACCAGCCAA_ACATGGX_XX_XX_X
27._PA_107_[PER]
GGGGAACCAGCCAACTACATGGX_XX_XX_X
28._PA_107_[PER]
GGGGAACCAGCCAACTACATGGX_XX_XX_X
29._GC-02-001-1-01
GGGGAACCAGCCAACTACATGGX_XX_XX_X
30._GC-08-111-3-10
GGGGAACCAGCC_CTACATGGX_XX_XX_X
31._GC-08-111-3-10
GGGGAACCAGCC_CTACATGGX_XX_XX_X
32._GC-08-111-3-10
GGGGAACCAGCCAACTACATGGX_XX_XX_X
33._GC-08-111-3-10
GGGGAACCAGCCAA_ACATGGX_XX_XX_X
34._GC-02-001-1-01
GGGGAACCAGCCAACTACATGGX_XX_XX_X
35._GC-02-001-1-01
GGGGAACCAGCCAA_ACATGGX_XX_XX_X
36._GC-02-001-1-01
GGGGAACCAGCCAACTACATGGX_XX_XX_X
37._PA_107_[PER]
GGGGAACCAGCCAA_ACATGGX_XX_XX_X
38._PA_107_[PER]
GGGGAACCAGCC_CTACATGGX_XX_XX_X
39._PA_107_[PER]
GGGGAACCAGCC_CTACATGGX_XX_XX_X
40._PA_107_[PER]
GGGGAACCAGCC_CTACATGGX_XX_XX_X
41._GC-08-111-3-10
GGGGAACCAGCC_CTACATGGX_XX_XX_X
42._PA_107_[PER]
GGGGAACCAGCCACCTACATGGX_XX_XX_X
43._PA_107_[PER]
GGGGAACCAGCCACCTACATGGX_XX_XX_X
44._RUQ_1728
____AG___AC__X_XX_XX_X
45._RUQ_1728
_GGAAGGAGGGACAGACATGGX_XX_XX_X
46._MITC-000340
_GGAAGGAGGGACAGACATGGX_XX_XX_X

Input profile: PA_107_[PER]

 
 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 12
 Dapeng Zhang, 2016

1._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 9
 Dapeng Zhang, 2016

2._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 4 > FP
 Dapeng Zhang, 2016

3._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 14 > F
 Dapeng Zhang, 2016

4._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 14 > F
 Dapeng Zhang, 2016

5._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 1 > FP
 Dapeng Zhang, 2016

6._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 16
 Dapeng Zhang, 2016

7._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 15
 Dapeng Zhang, 2016

8._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 11
 Dapeng Zhang, 2016

9._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 10
 Dapeng Zhang, 2016

10._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 10
 Dapeng Zhang, 2016

11._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

12._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

13._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

14._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

16._PA_107_[PER] GC-08-111-3-10

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

17._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

18._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

19._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

20._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

21._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

22._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

23._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

24._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 8
 Dapeng Zhang, 2016

25._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 8
 Dapeng Zhang, 2016

26._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 7
 Dapeng Zhang, 2016

27._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 5
 Dapeng Zhang, 2016

28._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 3
 Dapeng Zhang, 2016

29._PA_107_[PER] GC-02-001-1-01

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

30._PA_107_[PER] GC-08-111-3-10

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

31._PA_107_[PER] GC-08-111-3-10

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

32._PA_107_[PER] GC-08-111-3-10

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

33._PA_107_[PER] GC-08-111-3-10

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP1
 Mars, 2018

34._PA_107_[PER] GC-02-001-1-01

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

35._PA_107_[PER] GC-02-001-1-01

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

36._PA_107_[PER] GC-02-001-1-01

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

37._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 4 > FP
 Dapeng Zhang, 2016

38._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 14
 Dapeng Zhang, 2016

39._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 13
 Dapeng Zhang, 2016

40._PA_107_[PER]

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 7
 Dapeng Zhang, 2016

41._PA_107_[PER] GC-08-111-3-10

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

42._PA_107_[PER]

96.2 %
39 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 90 C0213 2B
 Dapeng Zhang, 2016

43._PA_107_[PER]

96.2 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 284
 Dapeng Zhang, 2016

44._PA_107_[PER] RUQ_1728

92.3 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

45._PA_107_[PER] RUQ_1728

51.5 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

46._PA_107_[PER] MITC-000340

51.5 %
34 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP144 38TcSNP32 39TcSNP25